STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALJ28482.1Lipoprotein. (108 aa)    
Predicted Functional Partners:
trbL
Conjugal transfer protein TrbL.
     
 0.819
trbE
Conjugal transfer ATPase TrbE.
     
 0.808
trbG
Conjugal transfer protein.
     
 0.791
trbJ
Conjugal transfer protein TrbJ.
       0.791
trbB
Conjugal transfer protein.
     
 0.790
trbI
Conjugal transfer protein.
     
 0.789
trbC
Conjugal transfer protein.
     
 0.786
trbF
Conjugal transfer protein TrbF.
     
 0.781
trbD
Conjugative transfer protein TrbD.
     
 0.781
traG
Conjugal transfer coupling protein TraG.
     
 0.776
Your Current Organism:
Stenotrophomonas acidaminiphila
NCBI taxonomy Id: 128780
Other names: ATCC 700916, CCUG 46887, CIP 106456, DSM 13117, JCM 13310, S. acidaminiphila, Stenotrophomonas acidaminiphila Assih et al. 2002, strain AMX 19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.