STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALJ29553.1Integrating conjugative element protein. (230 aa)    
Predicted Functional Partners:
ALJ29552.1
TIGR03750 family conjugative transfer region protein.
 
     0.953
ALJ29554.1
Secreted protein.
 
     0.953
ALJ29555.1
Integrating conjugative element protein.
 
     0.953
ALJ29556.1
Conjugal transfer protein.
 
     0.953
ALJ29557.1
Conjugal transfer protein.
 
     0.953
ALJ29558.1
DSBA oxidoreductase.
 
     0.929
ALJ29544.1
Integrating conjugative element protein.
 
     0.893
ALJ29546.1
Integrating conjugative element protein.
 
     0.893
ALJ29547.1
Conjugal transfer protein TraG.
 
     0.893
ALJ29548.1
Membrane protein.
 
     0.893
Your Current Organism:
Stenotrophomonas acidaminiphila
NCBI taxonomy Id: 128780
Other names: ATCC 700916, CCUG 46887, CIP 106456, DSM 13117, JCM 13310, S. acidaminiphila, Stenotrophomonas acidaminiphila Assih et al. 2002, strain AMX 19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.