STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALJ29834.1PBS lyase. (353 aa)    
Predicted Functional Partners:
ALJ29832.1
Tetratricopeptide TPR_1 repeat-containing protein.
 
     0.940
ALJ29830.1
Fibronectin type III domain-containing protein.
 
     0.935
ALJ29831.1
Phosphoglycerol transferase.
 
     0.919
ALJ29833.1
Glycosyl transferase.
 
     0.907
efp
Elongation factor P; Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family.
  
 0.885
yeiP
Elongation factor P.
  
 0.885
ALJ27933.1
Autotransporter beta-domain protein.
  
     0.769
ALJ28410.1
ABC transporter substrate-binding protein.
  
     0.769
ALJ28653.1
Activator of Hsp90 ATPase 1 family protein.
  
     0.769
ALJ28190.1
DNA/RNA helicase superfamily I.
  
    0.766
Your Current Organism:
Stenotrophomonas acidaminiphila
NCBI taxonomy Id: 128780
Other names: ATCC 700916, CCUG 46887, CIP 106456, DSM 13117, JCM 13310, S. acidaminiphila, Stenotrophomonas acidaminiphila Assih et al. 2002, strain AMX 19
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