STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001556105_00041Unannotated protein. (351 aa)    
Predicted Functional Partners:
GCA_001556105_01610
Unannotated protein.
    
 
 0.909
GCA_001556105_00723
Unannotated protein.
   
 
 0.841
GCA_001556105_00045
Unannotated protein.
 
     0.749
GCA_001556105_00043
Unannotated protein.
 
     0.615
GCA_001556105_00047
Unannotated protein.
  
     0.593
GCA_001556105_00044
Unannotated protein.
 
     0.542
GCA_001556105_00042
Unannotated protein.
 
     0.532
GCA_001556105_02638
Unannotated protein.
  
     0.528
GCA_001556105_00272
Unannotated protein.
  
  
  0.512
GCA_001556105_00330
Unannotated protein.
 
 
 
 0.505
Your Current Organism:
Pseudoxanthomonas mexicana
NCBI taxonomy Id: 128785
Other names: ATCC 700993, CCUG 49454, CIP 106674, JCM 11524, NBRC 101034, P. mexicana, Pseudomonas sp. WO24, Pseudoxanthomonas mexicana Thierry et al. 2004, Pseudoxanthomonas sp. UR374_02, strain AMX 26B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.