STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001556105_00892Unannotated protein. (146 aa)    
Predicted Functional Partners:
GCA_001556105_00817
Unannotated protein.
   
 
 0.926
GCA_001556105_00818
Unannotated protein.
   
 
 0.904
GCA_001556105_00786
Unannotated protein.
   
 
 0.899
GCA_001556105_01950
Unannotated protein.
   
 
 0.899
GCA_001556105_00893
Unannotated protein.
       0.536
GCA_001556105_01225
Unannotated protein.
   
    0.524
GCA_001556105_00891
Unannotated protein.
       0.511
GCA_001556105_00890
Unannotated protein.
 
     0.476
GCA_001556105_01226
Unannotated protein.
  
  
 0.460
GCA_001556105_02233
Unannotated protein.
  
 
 0.450
Your Current Organism:
Pseudoxanthomonas mexicana
NCBI taxonomy Id: 128785
Other names: ATCC 700993, CCUG 49454, CIP 106674, JCM 11524, NBRC 101034, P. mexicana, Pseudomonas sp. WO24, Pseudoxanthomonas mexicana Thierry et al. 2004, Pseudoxanthomonas sp. UR374_02, strain AMX 26B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.