STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001556105_01876Unannotated protein. (189 aa)    
Predicted Functional Partners:
GCA_001556105_01875
Unannotated protein.
 
   0.995
GCA_001556105_02762
Unannotated protein.
  
   0.913
GCA_001556105_01877
Unannotated protein.
       0.773
GCA_001556105_01874
Unannotated protein.
       0.642
GCA_001556105_01483
Unannotated protein.
  
     0.621
GCA_001556105_01878
Unannotated protein.
       0.528
GCA_001556105_01090
Unannotated protein.
  
     0.486
GCA_001556105_01361
Unannotated protein.
  
     0.444
GCA_001556105_03435
Unannotated protein.
  
     0.407
GCA_001556105_00512
Unannotated protein.
  
     0.402
Your Current Organism:
Pseudoxanthomonas mexicana
NCBI taxonomy Id: 128785
Other names: ATCC 700993, CCUG 49454, CIP 106674, JCM 11524, NBRC 101034, P. mexicana, Pseudomonas sp. WO24, Pseudoxanthomonas mexicana Thierry et al. 2004, Pseudoxanthomonas sp. UR374_02, strain AMX 26B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.