STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001556105_02541Unannotated protein. (646 aa)    
Predicted Functional Partners:
GCA_001556105_01801
Unannotated protein.
     
 0.921
GCA_001556105_00254
Unannotated protein.
   
 
 0.904
GCA_001556105_03046
Unannotated protein.
   
    0.706
GCA_001556105_00851
Unannotated protein.
     
 0.700
GCA_001556105_01971
Unannotated protein.
    
  0.695
GCA_001556105_00731
Unannotated protein.
    
  0.678
GCA_001556105_02006
Unannotated protein.
    
  0.677
GCA_001556105_02751
Unannotated protein.
   
  0.667
GCA_001556105_02781
Unannotated protein.
    
  0.644
GCA_001556105_00237
Unannotated protein.
     
 0.641
Your Current Organism:
Pseudoxanthomonas mexicana
NCBI taxonomy Id: 128785
Other names: ATCC 700993, CCUG 49454, CIP 106674, JCM 11524, NBRC 101034, P. mexicana, Pseudomonas sp. WO24, Pseudoxanthomonas mexicana Thierry et al. 2004, Pseudoxanthomonas sp. UR374_02, strain AMX 26B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.