STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001556105_02903Unannotated protein. (100 aa)    
Predicted Functional Partners:
GCA_001556105_02902
Unannotated protein.
       0.773
GCA_001556105_02904
Unannotated protein.
       0.737
GCA_001556105_02905
Unannotated protein.
       0.716
GCA_001556105_02906
Unannotated protein.
       0.716
GCA_001556105_02907
Unannotated protein.
       0.716
GCA_001556105_03129
Unannotated protein.
  
     0.696
GCA_001556105_02909
Unannotated protein.
       0.496
GCA_001556105_02908
Unannotated protein.
       0.475
GCA_001556105_01584
Unannotated protein.
  
     0.419
GCA_001556105_01733
Unannotated protein.
  
     0.416
Your Current Organism:
Pseudoxanthomonas mexicana
NCBI taxonomy Id: 128785
Other names: ATCC 700993, CCUG 49454, CIP 106674, JCM 11524, NBRC 101034, P. mexicana, Pseudomonas sp. WO24, Pseudoxanthomonas mexicana Thierry et al. 2004, Pseudoxanthomonas sp. UR374_02, strain AMX 26B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.