STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000812685_03203Unannotated protein. (490 aa)    
Predicted Functional Partners:
GCA_000812685_02194
Unannotated protein.
 
   
  0.902
GCA_000812685_03204
Unannotated protein.
  
  0.840
GCA_000812685_01927
Unannotated protein.
  
 
 0.835
GCA_000812685_03205
Unannotated protein.
    
  0.719
GCA_000812685_00692
Unannotated protein.
   
 
 0.718
GCA_000812685_02053
Unannotated protein.
 
0.718
GCA_000812685_02432
Unannotated protein.
   
 0.632
GCA_000812685_02446
Unannotated protein.
    
 0.628
GCA_000812685_00943
Unannotated protein.
     
 0.627
GCA_000812685_00819
Unannotated protein.
   
 
 0.626
Your Current Organism:
Halocynthiibacter namhaensis
NCBI taxonomy Id: 1290553
Other names: H. namhaensis, Halocynthiibacter namhaensis Kim et al. 2014, KCTC 32362, NBRC 109999, Rhodobacteraceae bacterium RA2-3, strain RA2-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.