STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000526495_00608Unannotated protein. (404 aa)    
Predicted Functional Partners:
GCA_000526495_00609
Unannotated protein.
    0.945
GCA_000526495_02492
Unannotated protein.
    0.770
GCA_000526495_01031
Unannotated protein.
    0.767
GCA_000526495_02763
Unannotated protein.
    0.767
GCA_000526495_02826
Unannotated protein.
    0.767
GCA_000526495_00388
Unannotated protein.
 
    0.763
GCA_000526495_02256
Unannotated protein.
  
    0.725
GCA_000526495_02804
Unannotated protein.
  
    0.725
GCA_000526495_03167
Unannotated protein.
  
    0.725
GCA_000526495_01147
Unannotated protein.
 
    0.720
Your Current Organism:
Ruminiclostridium josui
NCBI taxonomy Id: 1291050
Other names: Clostridium josui JCM 17888, R. josui JCM 17888, Ruminiclostridium josui JCM 17888
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.