STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM56111.1Signal transduction diguanylate cyclase. (591 aa)    
Predicted Functional Partners:
KRM55253.1
C-di-GMP-specific phosphodiesterase.
 
    0.767
KRM56112.1
Hypothetical protein.
 
0.741
KRM54533.1
C-di-GMP-specific phosphodiesterase.
 
    0.737
KRM54738.1
C-di-GMP-specific phosphodiesterase.
 
    0.725
KRM55977.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.689
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.655
KRM56110.1
Phage infection protein.
       0.603
KRM55161.1
Hypothetical protein.
 
0.475
KRM56101.1
Glycosyltransferase.
 
 
 0.467
KRM55130.1
Hypothetical protein.
 
 
 
0.447
Your Current Organism:
Lactobacillus sharpeae
NCBI taxonomy Id: 1291052
Other names: L. sharpeae JCM 1186 = DSM 20505, Lactobacillus sharpeae DSM 20505, Lactobacillus sharpeae JCM 1186 = DSM 20505, Lactobacillus sharpeae LMG 9214, Lactobacillus sharpeae NCIB 11720
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.