STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fniIsopentenyl pyrophosphate isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). (343 aa)    
Predicted Functional Partners:
KRM56050.1
Diphosphomevalonate decarboxylase.
 
  
 0.998
KRM56554.1
mvaK2 protein.
 
 0.988
KRM56049.1
Mevalonate kinase.
 
 
 0.973
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
 0.966
KRM55977.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.962
KRM56357.1
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 
 0.960
KRM54843.1
hydroxymethylglutaryl-CoA synthase.
 
 
 0.908
KRM54990.1
Hypothetical protein.
  
 
 0.743
KRM54842.1
hydroxymethylglutaryl-CoA reductase; Belongs to the HMG-CoA reductase family.
   
 0.733
KRM56044.1
Aspartate tyrosine aromatic aminotransferase.
  
 
 0.646
Your Current Organism:
Lactobacillus sharpeae
NCBI taxonomy Id: 1291052
Other names: L. sharpeae JCM 1186 = DSM 20505, Lactobacillus sharpeae DSM 20505, Lactobacillus sharpeae JCM 1186 = DSM 20505, Lactobacillus sharpeae LMG 9214, Lactobacillus sharpeae NCIB 11720
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