STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM54887.1fokIM protein. (664 aa)    
Predicted Functional Partners:
KRM55765.1
Modification methylase DpnIIA.
 
  
0.874
KRM54886.1
fokIR protein.
       0.650
KRM54622.1
Sheath tail protein.
 
    0.503
KRM55764.1
Hypothetical protein.
 
   
 0.488
KRM54782.1
Prophage antirepressor.
 
    0.473
KRM54629.1
Hypothetical protein.
 
    0.444
KRM54631.1
Hypothetical protein.
 
    0.423
KRM55685.1
Hypothetical protein.
  
     0.419
KRM54610.1
Prophage terminase small subunit.
 
    0.411
Your Current Organism:
Lactobacillus sharpeae
NCBI taxonomy Id: 1291052
Other names: L. sharpeae JCM 1186 = DSM 20505, Lactobacillus sharpeae DSM 20505, Lactobacillus sharpeae JCM 1186 = DSM 20505, Lactobacillus sharpeae LMG 9214, Lactobacillus sharpeae NCIB 11720
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.