Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KPY85360.1Proteinral secretion pathway protein I. (123 aa)    
Predicted Functional Partners:
KPY85366.1
Proteinral secretion pathway protein K.
  
 
 0.862
KPY80818.1
Proteinral secretion pathway protein GspJ.
  
 
 0.830
KPY85370.1
Proteinral secretion pathway protein F.
  
  
 0.783
KPY79988.1
Type II secretion system protein.
  
  
 0.716
KPY80246.1
DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.670
KPY83103.1
Proteinral secretion pathway protein E.
  
 
 0.666
KPY85353.1
Proteinral secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.666
KPY87535.1
Type IV pilus bioproteinsis protein.
  
 
 0.665
KPY79987.1
Type 4 prepilin-like protein leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.559
KPY80440.1
Flagellar basal body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.548
Your Current Organism:
Pseudomonas syringae tagetis
NCBI taxonomy Id: 129140
Other names: ICMP 4091, LMG 5090, LMG:5090, NCPPB 2488, P. syringae pv. tagetis, Pseudomonas syringae pv. tagetis, Pseudomonas tagetis
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