Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KPY86107.1ABC transporter ATP-binding/permease protein. (593 aa)    
Predicted Functional Partners:
KPY86108.1
ABC transporter, ATP-binding/permease protein.
 
 
 
0.989
KPY86117.1
Bactin synthetase, thiazolinyl reductase component Irp3.
 
  
 0.837
KPY86103.1
Isochorismate pyruvate-lyase.
 
    0.809
KPY86116.1
Isochorismate synthase.
  
    0.792
KPY85010.1
Chaperone protein HscC; Belongs to the heat shock protein 70 family.
  
 0.782
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.780
KPY86113.1
Bactin synthetase, thioesterase component Irp4.
 
  
 0.741
KPY86110.1
Yersiniabactin non-ribosomal peptide synthetase.
 
     0.740
KPY80591.1
ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
0.709
KPY84788.1
DnaJ domain-containing protein.
  
 
 
 0.699
Your Current Organism:
Pseudomonas syringae tagetis
NCBI taxonomy Id: 129140
Other names: ICMP 4091, LMG 5090, LMG:5090, NCPPB 2488, P. syringae pv. tagetis, Pseudomonas syringae pv. tagetis, Pseudomonas tagetis
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