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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPY86107.1ABC transporter ATP-binding/permease protein. (593 aa)    
Predicted Functional Partners:
KPY86108.1
ABC transporter, ATP-binding/permease protein.
 
  
0.893
KPY86258.1
ABC transporter ATP-binding/permease protein.
 
 
0.882
KPY82901.1
Non-ribosomal peptide synthetase/polyketide synthetase.
  
 0.873
KPY86117.1
Bactin synthetase, thiazolinyl reductase component Irp3.
 
  
 0.826
KPY86103.1
Isochorismate pyruvate-lyase.
 
  
 0.796
KPY86110.1
Yersiniabactin non-ribosomal peptide synthetase.
 
  
 0.785
KPY86116.1
Isochorismate synthase.
  
    0.770
KPY86105.1
Bactin synthetase, salycilate ligase component Irp5.
 
  
 0.749
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
  
 
 
 0.745
KPY87053.1
Ornithine acetyl transferase inhibitor.
  
 
 0.743
Your Current Organism:
Pseudomonas syringae tagetis
NCBI taxonomy Id: 129140
Other names: ICMP 4091, LMG 5090, LMG:5090, NCPPB 2488, P. syringae pv. tagetis, Pseudomonas syringae pv. tagetis, Pseudomonas tagetis
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