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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPY80818.1Proteinral secretion pathway protein GspJ. (57 aa)    
Predicted Functional Partners:
KPY85366.1
Proteinral secretion pathway protein K.
  
 
 0.988
KPY85359.1
Proteinral secretion pathway protein G.
  
 0.960
KPY79989.1
Type IV pilus bioproteinsis protein.
  
 0.939
KPY85360.1
Proteinral secretion pathway protein I.
  
 0.939
KPY88770.1
Type IV pilus bioproteinsis protein PilE.
    
 0.790
KPY79987.1
Type 4 prepilin-like protein leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.497
KPY82312.1
Proteinral secretion pathway protein D.
  
  
 0.473
KPY85367.1
Proteinral secretion pathway protein D.
  
  
 0.473
hrcC
Outer-membrane type III secretion protein HrcC.
  
  
 0.473
KPY79988.1
Type II secretion system protein.
  
  
 0.451
Your Current Organism:
Pseudomonas syringae tagetis
NCBI taxonomy Id: 129140
Other names: ICMP 4091, LMG 5090, LMG:5090, NCPPB 2488, P. syringae pv. tagetis, Pseudomonas syringae pv. tagetis, Pseudomonas tagetis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.