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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPY80755.1Putative Metalloprotease. (535 aa)    
Predicted Functional Partners:
KPY83108.1
Protease inhibitor Inh.
  
 
 0.942
KPY84109.1
Uncharacterized protein.
  
 0.808
KPY85503.1
Type I secretion system ATPase, PrtD.
 
 
 0.793
KPY83113.1
Type I secretion system ATPase, PrtD.
 
 
 0.790
KPY83128.1
Type I secretion membrane fusion protein, HlyD.
 
 
 0.781
KPY85342.1
TonB-dependent siderophore receptor.
  
 
 
 0.753
KPY90343.1
TonB-dependent receptor.
    
 
 0.711
KPY83834.1
TonB-denpendent receptor.
    
 
 0.711
KPY88279.1
TonB-dependent outer membrane heme receptor.
    
 
 0.711
KPY86106.1
Putative TonB-dependent siderophore receptor.
    
 
 0.711
Your Current Organism:
Pseudomonas syringae tagetis
NCBI taxonomy Id: 129140
Other names: ICMP 4091, LMG 5090, LMG:5090, NCPPB 2488, P. syringae pv. tagetis, Pseudomonas syringae pv. tagetis, Pseudomonas tagetis
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