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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPY80856.1Uncharacterized protein. (116 aa)    
Predicted Functional Partners:
fliA
RNA polymerase sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.
  
 
 0.787
KPY80208.1
Dihydrofolate synthase; Belongs to the folylpolyglutamate synthase family.
  
  
 0.501
KPY89672.1
Penicillin-binding protein 1A.
    
  0.496
KPY86302.1
ErfK/YbiS/YcfS/YnhG family protein.
    
  0.480
KPY84589.1
Carbamoyl-phosphate synthase subunit L.
    
  0.472
KPY87924.1
Carbamoyl-phosphate synthase subunit L.
    
  0.472
KPY89736.1
Malonate decarboxylase, gamma subunit.
  
 
  0.463
KPY89664.1
Malonate decarboxylase, beta subunit.
  
 
  0.463
accD
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
  
 
  0.463
KPY80806.1
Metalloprotease; Extracellular zinc metalloprotease.
       0.455
Your Current Organism:
Pseudomonas syringae tagetis
NCBI taxonomy Id: 129140
Other names: ICMP 4091, LMG 5090, LMG:5090, NCPPB 2488, P. syringae pv. tagetis, Pseudomonas syringae pv. tagetis, Pseudomonas tagetis
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