KPY80845.1 protein (Pseudomonas syringae tagetis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

KPY80845.1

Uncharacterized protein. (177 aa)

Predicted Functional Partners:

KPY80826.1

0.772

KPY83779.1

0.572

KPY86507.1

0.572

KPY86412.1

0.572

KPY86642.1

0.572

KPY86641.1

0.572

KPY82900.1

0.572

KPY88134.1

0.572

KPY80103.1

0.535

KPY84346.1

0.414

Your Current Organism:

Pseudomonas syringae tagetis

NCBI taxonomy Id: 129140
Other names: ICMP 4091, LMG 5090, LMG:5090, NCPPB 2488, P. syringae pv. tagetis, Pseudomonas syringae pv. tagetis, Pseudomonas tagetis

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KPY80103.1	KPY80845.1	ALO44_04928	ALO44_02473	TonB-dependent siderophore receptor.	Uncharacterized protein.	0.535
KPY80826.1	KPY80845.1	ALO44_05144	ALO44_02473	Zinc carboxypeptidase domain protein.	Uncharacterized protein.	0.772
KPY80845.1	KPY80103.1	ALO44_02473	ALO44_04928	Uncharacterized protein.	TonB-dependent siderophore receptor.	0.535
KPY80845.1	KPY80826.1	ALO44_02473	ALO44_05144	Uncharacterized protein.	Zinc carboxypeptidase domain protein.	0.772
KPY80845.1	KPY82900.1	ALO44_02473	ALO44_05559	Uncharacterized protein.	TonB-dependent siderophore receptor.	0.572
KPY80845.1	KPY83779.1	ALO44_02473	ALO44_00555	Uncharacterized protein.	Outer membrane ferripyoverdine receptor.	0.572
KPY80845.1	KPY84346.1	ALO44_02473	ALO44_00081	Uncharacterized protein.	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	0.414
KPY80845.1	KPY86412.1	ALO44_02473	ALO44_04640	Uncharacterized protein.	TonB-dependent siderophore receptor.	0.572
KPY80845.1	KPY86507.1	ALO44_02473	ALO44_03652	Uncharacterized protein.	Putative TonB-dependent siderophore receptor.	0.572
KPY80845.1	KPY86641.1	ALO44_02473	ALO44_05441	Uncharacterized protein.	Putative TonB-dependent siderophore receptor.	0.572
KPY80845.1	KPY86642.1	ALO44_02473	ALO44_05440	Uncharacterized protein.	Ligand-gated channel.	0.572
KPY80845.1	KPY88134.1	ALO44_02473	ALO44_100072	Uncharacterized protein.	TonB-dependent siderophore receptor.	0.572
KPY82900.1	KPY80845.1	ALO44_05559	ALO44_02473	TonB-dependent siderophore receptor.	Uncharacterized protein.	0.572
KPY83779.1	KPY80845.1	ALO44_00555	ALO44_02473	Outer membrane ferripyoverdine receptor.	Uncharacterized protein.	0.572
KPY84346.1	KPY80845.1	ALO44_00081	ALO44_02473	RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.	Uncharacterized protein.	0.414
KPY86412.1	KPY80845.1	ALO44_04640	ALO44_02473	TonB-dependent siderophore receptor.	Uncharacterized protein.	0.572
KPY86507.1	KPY80845.1	ALO44_03652	ALO44_02473	Putative TonB-dependent siderophore receptor.	Uncharacterized protein.	0.572
KPY86641.1	KPY80845.1	ALO44_05441	ALO44_02473	Putative TonB-dependent siderophore receptor.	Uncharacterized protein.	0.572
KPY86641.1	KPY86642.1	ALO44_05441	ALO44_05440	Putative TonB-dependent siderophore receptor.	Ligand-gated channel.	0.418
KPY86642.1	KPY80845.1	ALO44_05440	ALO44_02473	Ligand-gated channel.	Uncharacterized protein.	0.572