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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPY80746.1Putative cobalt transporter subunit CbtB. (60 aa)    
Predicted Functional Partners:
KPY80764.1
Uncharacterized protein.
 
    0.971
KPY80783.1
Cobalamin biosynthesis protein CobE.
       0.803
KPY80787.1
Precorrin-4 C11-methyltransferase.
       0.717
KPY89040.1
Receptor family ligand binding protein.
  
     0.490
KPY87048.1
MgoD.
  
     0.482
KPY82565.1
BNR/Asp-box repeat protein.
  
     0.480
KPY88935.1
Host specificity protein J.
  
     0.408
KPY83112.1
Serralysin.
  
     0.402
Your Current Organism:
Pseudomonas syringae tagetis
NCBI taxonomy Id: 129140
Other names: ICMP 4091, LMG 5090, LMG:5090, NCPPB 2488, P. syringae pv. tagetis, Pseudomonas syringae pv. tagetis, Pseudomonas tagetis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.