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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPY80853.1LmbE-like protein. (257 aa)    
Predicted Functional Partners:
KPY80838.1
Uncharacterized protein.
     0.982
cysS
Cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.833
KPY80750.1
Glycosyl transferase, group 2 family protein.
 
   
 0.807
KPY84034.1
AcnD-accessory protein PrpF.
    
 0.801
pgl
6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
    
 0.800
KPY90190.1
ROK protein.
    
  0.796
KPY80854.1
Glycogen debranching enzyme GlgX; Belongs to the glycosyl hydrolase 13 family.
       0.785
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
     
 0.764
glmS
Glutamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
    
  0.753
KPY88141.1
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
     
 0.752
Your Current Organism:
Pseudomonas syringae tagetis
NCBI taxonomy Id: 129140
Other names: ICMP 4091, LMG 5090, LMG:5090, NCPPB 2488, P. syringae pv. tagetis, Pseudomonas syringae pv. tagetis, Pseudomonas tagetis
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