KPY85893.1 protein (Pseudomonas syringae tagetis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KPY85893.1

Uncharacterized protein. (329 aa)

Predicted Functional Partners:

KPY83693.1

0.832

KPY85904.1

0.783

KPY87032.1

0.777

KPY88335.1

0.697

KPY88138.1

0.528

KPY83782.1

0.524

KPY85916.1

0.478

KPY84659.1

0.465

KPY80317.1

0.463

KPY89934.1

0.430

Your Current Organism:

Pseudomonas syringae tagetis

NCBI taxonomy Id: 129140
Other names: ICMP 4091, LMG 5090, LMG:5090, NCPPB 2488, P. syringae pv. tagetis, Pseudomonas syringae pv. tagetis, Pseudomonas tagetis

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KPY80317.1	KPY83693.1	ALO44_04567	ALO44_00640	Pyoverdine sidechain peptide synthetase II, D-Asp-L-Thr component.	Uncharacterized protein.	0.444
KPY80317.1	KPY85893.1	ALO44_04567	ALO44_03089	Pyoverdine sidechain peptide synthetase II, D-Asp-L-Thr component.	Uncharacterized protein.	0.463
KPY80317.1	KPY85904.1	ALO44_04567	ALO44_03088	Pyoverdine sidechain peptide synthetase II, D-Asp-L-Thr component.	Uncharacterized protein.	0.475
KPY80317.1	KPY88335.1	ALO44_04567	ALO44_01127	Pyoverdine sidechain peptide synthetase II, D-Asp-L-Thr component.	YD repeat protein.	0.462
KPY83693.1	KPY80317.1	ALO44_00640	ALO44_04567	Uncharacterized protein.	Pyoverdine sidechain peptide synthetase II, D-Asp-L-Thr component.	0.444
KPY83693.1	KPY83782.1	ALO44_00640	ALO44_00571	Uncharacterized protein.	Uncharacterized protein.	0.522
KPY83693.1	KPY84659.1	ALO44_00640	ALO44_100155	Uncharacterized protein.	Hypothetical protein.	0.642
KPY83693.1	KPY85893.1	ALO44_00640	ALO44_03089	Uncharacterized protein.	Uncharacterized protein.	0.832
KPY83693.1	KPY85904.1	ALO44_00640	ALO44_03088	Uncharacterized protein.	Uncharacterized protein.	0.813
KPY83693.1	KPY87032.1	ALO44_00640	ALO44_02353	Uncharacterized protein.	Uncharacterized protein.	0.777
KPY83693.1	KPY88138.1	ALO44_00640	ALO44_02547	Uncharacterized protein.	Sugar transferase.	0.528
KPY83693.1	KPY88335.1	ALO44_00640	ALO44_01127	Uncharacterized protein.	YD repeat protein.	0.443
KPY83782.1	KPY83693.1	ALO44_00571	ALO44_00640	Uncharacterized protein.	Uncharacterized protein.	0.522
KPY83782.1	KPY85893.1	ALO44_00571	ALO44_03089	Uncharacterized protein.	Uncharacterized protein.	0.524
KPY83782.1	KPY85904.1	ALO44_00571	ALO44_03088	Uncharacterized protein.	Uncharacterized protein.	0.550
KPY83782.1	KPY88335.1	ALO44_00571	ALO44_01127	Uncharacterized protein.	YD repeat protein.	0.471
KPY83782.1	KPY89934.1	ALO44_00571	ALO44_05607	Uncharacterized protein.	Autotransporter.	0.694
KPY84659.1	KPY83693.1	ALO44_100155	ALO44_00640	Hypothetical protein.	Uncharacterized protein.	0.642
KPY84659.1	KPY85893.1	ALO44_100155	ALO44_03089	Hypothetical protein.	Uncharacterized protein.	0.465
KPY84659.1	KPY85904.1	ALO44_100155	ALO44_03088	Hypothetical protein.	Uncharacterized protein.	0.467