KPY87313.1 protein (Pseudomonas syringae tagetis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

KPY87313.1

Uncharacterized protein. (247 aa)

Predicted Functional Partners:

KPY87345.1

0.933

KPY87317.1

0.867

KPY87315.1

0.694

gcvP

0.690

KPY84773.1

0.687

KPY87973.1

0.663

KPY82321.1

0.656

cysC

0.653

cysN

0.653

lptC

0.572

Your Current Organism:

Pseudomonas syringae tagetis

NCBI taxonomy Id: 129140
Other names: ICMP 4091, LMG 5090, LMG:5090, NCPPB 2488, P. syringae pv. tagetis, Pseudomonas syringae pv. tagetis, Pseudomonas tagetis

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KPY82321.1	KPY87313.1	ALO44_00673	ALO44_03419	Lipoprotein.	Uncharacterized protein.	0.656
KPY82321.1	KPY87345.1	ALO44_00673	ALO44_100048	Lipoprotein.	Penicillin-binding protein; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	0.425
KPY84773.1	KPY87313.1	ALO44_100417	ALO44_03419	Peptidase, M23/M37 family.	Uncharacterized protein.	0.687
KPY87313.1	KPY82321.1	ALO44_03419	ALO44_00673	Uncharacterized protein.	Lipoprotein.	0.656
KPY87313.1	KPY84773.1	ALO44_03419	ALO44_100417	Uncharacterized protein.	Peptidase, M23/M37 family.	0.687
KPY87313.1	KPY87315.1	ALO44_03419	ALO44_03418	Uncharacterized protein.	Gluconate kinase domain protein.	0.694
KPY87313.1	KPY87317.1	ALO44_03419	ALO44_03420	Uncharacterized protein.	tRNA pseudouridine synthase C.	0.867
KPY87313.1	KPY87345.1	ALO44_03419	ALO44_100048	Uncharacterized protein.	Penicillin-binding protein; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	0.933
KPY87313.1	KPY87973.1	ALO44_03419	ALO44_05070	Uncharacterized protein.	Membrane protein.	0.663
KPY87313.1	cysC	ALO44_03419	ALO44_02775	Uncharacterized protein.	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.	0.653
KPY87313.1	cysN	ALO44_03419	ALO44_03257	Uncharacterized protein.	Sulfate adenylyltransferase subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.	0.653
KPY87313.1	gcvP	ALO44_03419	ALO44_01167	Uncharacterized protein.	Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	0.690
KPY87313.1	lptC	ALO44_03419	ALO44_03242	Uncharacterized protein.	Uncharacterized protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA.	0.572
KPY87315.1	KPY87313.1	ALO44_03418	ALO44_03419	Gluconate kinase domain protein.	Uncharacterized protein.	0.694
KPY87315.1	KPY87317.1	ALO44_03418	ALO44_03420	Gluconate kinase domain protein.	tRNA pseudouridine synthase C.	0.614
KPY87315.1	KPY87345.1	ALO44_03418	ALO44_100048	Gluconate kinase domain protein.	Penicillin-binding protein; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).	0.636
KPY87315.1	cysC	ALO44_03418	ALO44_02775	Gluconate kinase domain protein.	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.	0.852
KPY87315.1	cysN	ALO44_03418	ALO44_03257	Gluconate kinase domain protein.	Sulfate adenylyltransferase subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.	0.852
KPY87317.1	KPY87313.1	ALO44_03420	ALO44_03419	tRNA pseudouridine synthase C.	Uncharacterized protein.	0.867
KPY87317.1	KPY87315.1	ALO44_03420	ALO44_03418	tRNA pseudouridine synthase C.	Gluconate kinase domain protein.	0.614