KPY80516.1 protein (Pseudomonas syringae tagetis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

KPY80516.1

Uncharacterized protein. (129 aa)

Predicted Functional Partners:

KPY86269.1

0.826

KPY81224.1

0.495

KPY81782.1

0.462

Your Current Organism:

Pseudomonas syringae tagetis

NCBI taxonomy Id: 129140
Other names: ICMP 4091, LMG 5090, LMG:5090, NCPPB 2488, P. syringae pv. tagetis, Pseudomonas syringae pv. tagetis, Pseudomonas tagetis

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KPY80516.1	KPY81224.1	ALO44_03436	ALO44_200011	Uncharacterized protein.	Hypothetical protein.	0.495
KPY80516.1	KPY81782.1	ALO44_03436	ALO44_00219	Uncharacterized protein.	PilT protein.	0.462
KPY80516.1	KPY86269.1	ALO44_03436	ALO44_01770	Uncharacterized protein.	Uncharacterized protein.	0.826
KPY81224.1	KPY80516.1	ALO44_200011	ALO44_03436	Hypothetical protein.	Uncharacterized protein.	0.495
KPY81224.1	KPY86269.1	ALO44_200011	ALO44_01770	Hypothetical protein.	Uncharacterized protein.	0.433
KPY81782.1	KPY80516.1	ALO44_00219	ALO44_03436	PilT protein.	Uncharacterized protein.	0.462
KPY86269.1	KPY80516.1	ALO44_01770	ALO44_03436	Uncharacterized protein.	Uncharacterized protein.	0.826
KPY86269.1	KPY81224.1	ALO44_01770	ALO44_200011	Uncharacterized protein.	Hypothetical protein.	0.433