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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPY84478.1Glycoside hydrolase family protein. (181 aa)    
Predicted Functional Partners:
KPY84470.1
Uncharacterized protein.
  
  
 0.828
KPY84466.1
Tail fiber protein H.
  
    0.760
KPY84515.1
NLP/P60-like protein-like protein.
  
    0.674
KPY84513.1
Bacteriophage lambda tail assembly I.
  
    0.666
KPY84508.1
Prophage PssSM-02, minor tail protein.
  
    0.648
KPY84479.1
Tail fiber assembly domain-containing protein.
  
  
 0.634
KPY87764.1
Prophage PSPPH02, tail protein X.
 
  
 0.595
KPY84439.1
Phage baseplate assembly protein V.
 
     0.584
KPY88935.1
Host specificity protein J.
  
    0.571
KPY87769.1
Prophage PSPPH02, putative late control protein D protein.
  
  
 0.571
Your Current Organism:
Pseudomonas syringae tagetis
NCBI taxonomy Id: 129140
Other names: ICMP 4091, LMG 5090, LMG:5090, NCPPB 2488, P. syringae pv. tagetis, Pseudomonas syringae pv. tagetis, Pseudomonas tagetis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.