STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPY84439.1Phage baseplate assembly protein V. (170 aa)    
Predicted Functional Partners:
KPY84482.1
Phage GP46.
 
    0.979
KPY84494.1
Baseplate J-like protein.
 
    0.974
KPY84490.1
Tail protein.
 
    0.972
KPY84465.1
Prophage PSPPH01, DNA circulation protein.
 
    0.970
KPY84444.1
Bacteriophage Mu P.
 
    0.962
KPY84460.1
Tail tape measure protein.
 
     0.922
KPY84448.1
Tail sheath protein.
 
  
 0.878
KPY84466.1
Tail fiber protein H.
 
    0.836
KPY84479.1
Tail fiber assembly domain-containing protein.
  
    0.791
KPY84659.1
Hypothetical protein.
  
     0.620
Your Current Organism:
Pseudomonas syringae tagetis
NCBI taxonomy Id: 129140
Other names: ICMP 4091, LMG 5090, LMG:5090, NCPPB 2488, P. syringae pv. tagetis, Pseudomonas syringae pv. tagetis, Pseudomonas tagetis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.