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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPY84488.1Spermidine/putrescine ABC transporter permease component. (273 aa)    
Predicted Functional Partners:
KPY84436.1
Polyamine ABC transporter permease.
 
 0.996
KPY82438.1
Binding-protein dependent transport system inner membrane protein.
 
0.987
KPY84443.1
Extracellular solute-binding protein.
 
 
 0.972
potA-2
Polyamine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 0.964
KPY81688.1
Putrescine-binding periplasmic protein.
 
 0.957
KPY81691.1
Putrescine-binding periplasmic protein.
 
 0.953
KPY82444.1
Spermidine/putrescine ABC transporter periplasmic spermidine/putrescine-binding protein.
 
 
 0.936
KPY82391.1
Spermidine/putrescine ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.931
KPY86595.1
Hypothetical protein.
 
 0.929
KPY84688.1
Putrescine-binding periplasmic protein.
 
 0.913
Your Current Organism:
Pseudomonas syringae tagetis
NCBI taxonomy Id: 129140
Other names: ICMP 4091, LMG 5090, LMG:5090, NCPPB 2488, P. syringae pv. tagetis, Pseudomonas syringae pv. tagetis, Pseudomonas tagetis
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