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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPY83171.1Uncharacterized protein. (216 aa)    
Predicted Functional Partners:
KPY83187.1
Cobalamin synthesis protein/P47K family protein.
 
  
 0.981
KPY83175.1
Uncharacterized protein.
  
    0.812
KPY83143.1
Putative CobW-related G3E family GTPase.
 
  
 0.760
KPY88136.1
RNA polymerase-binding protein DksA.
  
    0.661
KPY86464.1
Carbonic anhydrase-like protein.
  
    0.623
rpmE2
50S ribosomal protein L31 type B.
   
    0.546
folE2
GTP cyclohydrolase I type 2; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
    0.524
macB
Macrolide export ATP-binding/permease protein MacB; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
    0.477
KPY88816.1
GTP-binding protein YjiA.
 
  
 0.474
KPY84360.1
Cobalamin synthesis protein/P47K family protein.
 
  
 0.470
Your Current Organism:
Pseudomonas syringae tagetis
NCBI taxonomy Id: 129140
Other names: ICMP 4091, LMG 5090, LMG:5090, NCPPB 2488, P. syringae pv. tagetis, Pseudomonas syringae pv. tagetis, Pseudomonas tagetis
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