KPY84850.1 protein (Pseudomonas syringae tagetis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KPY84850.1

Uncharacterized protein. (85 aa)

Predicted Functional Partners:

KPY84843.1

0.550

KPY84825.1

0.481

KPY84885.1

0.401

Your Current Organism:

Pseudomonas syringae tagetis

NCBI taxonomy Id: 129140
Other names: ICMP 4091, LMG 5090, LMG:5090, NCPPB 2488, P. syringae pv. tagetis, Pseudomonas syringae pv. tagetis, Pseudomonas tagetis

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KPY84825.1	KPY84850.1	ALO44_03946	ALO44_05491	Auxin-binding protein.	Uncharacterized protein.	0.481
KPY84843.1	KPY84850.1	ALO44_03945	ALO44_05491	Hypothetical protein.	Uncharacterized protein.	0.550
KPY84843.1	KPY84885.1	ALO44_03945	ALO44_03944	Hypothetical protein.	Uncharacterized protein.	0.545
KPY84850.1	KPY84825.1	ALO44_05491	ALO44_03946	Uncharacterized protein.	Auxin-binding protein.	0.481
KPY84850.1	KPY84843.1	ALO44_05491	ALO44_03945	Uncharacterized protein.	Hypothetical protein.	0.550
KPY84850.1	KPY84885.1	ALO44_05491	ALO44_03944	Uncharacterized protein.	Uncharacterized protein.	0.401
KPY84885.1	KPY84843.1	ALO44_03944	ALO44_03945	Uncharacterized protein.	Hypothetical protein.	0.545
KPY84885.1	KPY84850.1	ALO44_03944	ALO44_05491	Uncharacterized protein.	Uncharacterized protein.	0.401