STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rexRedox-sensing transcriptional repressor Rex; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state. (220 aa)    
Predicted Functional Partners:
KRK70343.1
Acetaldehyde dehydrogenase (acetylating); In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.580
KRK70361.1
ABC transporter ATP-binding protein.
       0.536
rnpA
RNase P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
    0.534
KRK70357.1
Hypothetical protein.
       0.519
KRK70358.1
Multidrug ABC transporter ATPase.
       0.519
KRK70359.1
Hypothetical protein.
       0.519
KRK70362.1
Transporter, major facilitator family protein.
       0.504
tilS
tRNA(Ile)-lysidine synthetase MesJ; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
      
 0.461
rpsP
Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
   
    0.412
Your Current Organism:
Lactobacillus nasuensis
NCBI taxonomy Id: 1291734
Other names: L. nasuensis JCM 17158, Lactobacillus nasuensis JCM 17158, Lactobacillus nasuensis SU 18, Lactobacillus sp. SU 18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.