STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK73284.1Metal-sulfur cluster biosynthetic enzyme. (111 aa)    
Predicted Functional Partners:
KRK74140.1
Fe-S cluster assembly ABC transporter ATPase.
 
  
 0.786
KRK73283.1
Hypothetical protein; Belongs to the 4-oxalocrotonate tautomerase family.
       0.738
KRK74141.1
Fe-S cluster assembly ABC transporter permease.
 
   
 0.703
KRK73287.1
tRNA and rRNA cytosine-C5-methylase.
       0.671
KRK74143.1
Fe-S cluster formation protein, NifU-like.
  
    0.649
KRK73285.1
SAM-dependent methyltransferase.
       0.649
KRK73286.1
Hypothetical protein.
       0.646
KRK74144.1
ABC transporter.
 
   
 0.606
KRK74142.1
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.585
rnhB
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.545
Your Current Organism:
Lactobacillus nasuensis
NCBI taxonomy Id: 1291734
Other names: L. nasuensis JCM 17158, Lactobacillus nasuensis JCM 17158, Lactobacillus nasuensis SU 18, Lactobacillus sp. SU 18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.