STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK72593.1Superfamily II DNA RNA helicase. (424 aa)    
Predicted Functional Partners:
KRK72592.1
Amidophosphoribosyltransferase.
 
  
 0.894
KRK74419.1
DNA uptake protein-like DNA-binding protein.
   
  
 0.853
KRK74420.1
Competence protein EC.
   
  
 0.780
KRK74196.1
Competence protein ComGA.
   
  
 0.763
KRK72594.1
IMPACT family member yvyE.
     
 0.707
KRK70830.1
Primosomal protein DnaI.
  
     0.656
KRK73297.1
DNA replication protein DnaD.
  
     0.640
KRK74198.1
Hypothetical protein.
   
  
 0.631
KRK73282.1
Rossmann nucleotide-binding protein for DNA uptake.
   
  
 0.598
KRK74197.1
Type II secretory pathway competence component.
   
  
 0.587
Your Current Organism:
Lactobacillus nasuensis
NCBI taxonomy Id: 1291734
Other names: L. nasuensis JCM 17158, Lactobacillus nasuensis JCM 17158, Lactobacillus nasuensis SU 18, Lactobacillus sp. SU 18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.