STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK71817.1Antimicrobial peptide ABC transporter permease. (670 aa)    
Predicted Functional Partners:
KRK71816.1
ABC superfamily ATP binding cassette transporter, ABC protein.
 0.988
KRK70849.1
Abc transporter, atp-binding protein.
 0.918
KRK71814.1
Signal transduction histidine kinase.
 
 
 
 0.909
KRK71815.1
DNA-binding response regulator, OmpR family (Rec-wHTH domains).
 
     0.877
KRK70941.1
ABC transporter, ATP-binding protein.
 
 0.829
KRK70969.1
ABC superfamily ATP binding cassette transporter, ABC protein.
 
 0.809
KRK71785.1
Peptide ABC transporter ATPase.
  
 0.809
KRK71007.1
ABC superfamily ATP binding cassette transporter, ABC protein.
 
 0.808
KRK70452.1
Multiple sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.808
KRK73822.1
Hypothetical protein.
  
 
 0.802
Your Current Organism:
Lactobacillus nasuensis
NCBI taxonomy Id: 1291734
Other names: L. nasuensis JCM 17158, Lactobacillus nasuensis JCM 17158, Lactobacillus nasuensis SU 18, Lactobacillus sp. SU 18
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