STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAP84880.1DNA-binding protein; Gene_300; identified by MetaGeneAnnotator; putative; Belongs to the Dps family. (180 aa)    
Predicted Functional Partners:
BAP84879.1
Copper chaperone; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain..; cd00371; copper chaperone [Enterococcus faecium Com15]; gene_299; identified by MetaGeneAnnotator; putative; metal-binding site [ion binding].
 
  
 0.992
BAP84878.1
Cadmium transporting P-type ATPase; COG2217 Cation transport ATPase; E1-E2 ATPase; pfam00122; Haloacid Dehalogenase-like Hydrolases; cl11391; cadmium transporting P-type ATPase, partial [Lactobacillus coryniformis subsp. coryniformis KCTC 3167]; gene_298; heavy metal translocating P-type ATPase; TIGR01525; identified by MetaGeneAnnotator; putative.
 
  
 0.855
BAP84626.1
FNR-like transcriptional regulator; Gene_46; identified by MetaGeneAnnotator; putative.
 
    0.821
BAP86624.1
Crp family transcriptional regulator [Lactobacillus plantarum WCFS1]; DNA binding site [nucleotide binding]; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]; COG0664; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO..; cd00038; flexible hinge region; gene_2044; helix_turn_helix, cAMP Regulatory p [...]
 
    0.782
BAP84625.1
Hypothetical protein zj316_1484 [Lactobacillus plantarum ZJ316]; gene_45; identified by MetaGeneAnnotator; putative.
 
    0.499
BAP84870.1
Peptidase; Gene_290; identified by MetaGeneAnnotator; putative.
 
     0.467
BAP86603.1
NADPH-dependent FMN reductase; KEGG: bsu:BSU36150 5.8e-05 ywqN; putative oxidoreductase; NADPH-dependent FMN reductase; pfam03358; flavin reductase [Lactobacillus parafarraginis F0439]; gene_2023; identified by MetaGeneAnnotator; putative.
  
  
 0.459
BAP85381.1
Hypothetical protein; Gene_801; identified by MetaGeneAnnotator; putative.
  
    0.439
BAP86699.1
OsmC/Ohr family protein; Gene_2119; identified by MetaGeneAnnotator; putative.
  
  
 0.430
BAP86700.1
OsmC/Ohr family protein; Gene_2120; identified by MetaGeneAnnotator; putative.
  
  
 0.430
Your Current Organism:
Lactobacillus hokkaidonensis
NCBI taxonomy Id: 1291742
Other names: L. hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis LOOC260, Lactobacillus sp. LOOC260
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.