STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAP85087.1TetR family transcriptional regulator; Gene_507; identified by MetaGeneAnnotator; putative. (197 aa)    
Predicted Functional Partners:
BAP85388.1
Hypothetical protein; Gene_808; identified by MetaGeneAnnotator; putative.
  
     0.590
BAP84725.1
ATPase, MoxR family; Gene_145; identified by MetaGeneAnnotator; putative.
  
    0.573
BAP84726.1
Hypothetical protein; Gene_146; identified by MetaGeneAnnotator; putative.
  
     0.521
BAP85426.1
Hypothetical protein; Gene_846; identified by MetaGeneAnnotator; putative.
  
     0.486
BAP85086.1
ATP binding site [chemical binding]; ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones [Lactobacillus brevis ATCC 367]; C-terminal, D2-small domain, of ClpB protein; pfam10431; Clp amino terminal domain; pfam02861; Clp protease ATP binding subunit; CHL00095; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; cd00009; UvrB/uvrC motif; pfam02151; Walker A motif; Walker B moti [...]
  
    0.473
rpoB
DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
     
 0.456
BAP85085.1
CtsR family transcriptional regulator; COG: COG4463; Firmicute transcriptional repressor of class III stress genes (CtsR); pfam05848; gene_505; identified by MetaGeneAnnotator; putative; transcriptional regulator CtsR [Lactobacillus reuteri MM2- 3]; Belongs to the CtsR family.
       0.450
BAP85845.1
Hypothetical protein; Gene_1265; identified by MetaGeneAnnotator; putative.
  
     0.440
BAP86627.1
Hypothetical protein; Gene_2047; identified by MetaGeneAnnotator; putative.
  
     0.439
BAP85861.1
Hypothetical protein; Gene_1281; identified by MetaGeneAnnotator; putative.
 
     0.416
Your Current Organism:
Lactobacillus hokkaidonensis
NCBI taxonomy Id: 1291742
Other names: L. hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis LOOC260, Lactobacillus sp. LOOC260
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.