STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAP85274.1Peptidoglycan-binding protein LysM; Conserved domain protein, partial [Enterococcus faecium TX0133a01]; gene_694; identified by MetaGeneAnnotator; putative. (237 aa)    
Predicted Functional Partners:
BAP86016.1
Competence protein ComGB; Gene_1436; identified by MetaGeneAnnotator; putative.
  
 
   0.578
BAP86017.1
Competence protein ComGA; Gene_1437; identified by MetaGeneAnnotator; putative.
    
   0.523
BAP86603.1
NADPH-dependent FMN reductase; KEGG: bsu:BSU36150 5.8e-05 ywqN; putative oxidoreductase; NADPH-dependent FMN reductase; pfam03358; flavin reductase [Lactobacillus parafarraginis F0439]; gene_2023; identified by MetaGeneAnnotator; putative.
   
  
 0.455
BAP85234.1
Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; LysM; extracellular protein; aggregation promoting protein [Lactobacillus acidophilus NCFM]; gene_654; identified by MetaGeneAnnotator; putative.
 
  
0.451
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
       0.435
BAP85275.1
acyl-CoA hydrolase; Gene_695; identified by MetaGeneAnnotator; putative.
       0.401
Your Current Organism:
Lactobacillus hokkaidonensis
NCBI taxonomy Id: 1291742
Other names: L. hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis LOOC260, Lactobacillus sp. LOOC260
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