STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAP85340.1Short-chain dehydrogenase; Rossmann-fold NAD(P)(+)-binding proteins; cl09931; Short-chain dehydrogenase/reductase SDR YhxC (fragment) [[Clostridium] sticklandii]; gene_760; identified by MetaGeneAnnotator; putative. (282 aa)    
Predicted Functional Partners:
BAP85339.1
Membrane protein; KEGG: bmq:BMQ_1760 4.4e-16 transglycosylase associated protein; Psort location: CytoplasmicMembrane, score: 10.00; gene_759; identified by MetaGeneAnnotator; putative; transglycosylase associated protein [Enterococcus faecium R499].
  
    0.473
BAP85341.1
Hypothetical protein; Gene_761; identified by MetaGeneAnnotator; putative.
       0.449
tspO
Tryptophan-rich sensory protein; Gene_657; identified by MetaGeneAnnotator; putative.
 
    0.443
BAP86538.1
enoyl-CoA hydratase; Gene_1958; identified by MetaGeneAnnotator; putative.
 
 0.426
BAP86271.1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 
 0.423
BAP85336.1
Hypothetical protein; Gene_756; identified by MetaGeneAnnotator; putative.
  
    0.408
Your Current Organism:
Lactobacillus hokkaidonensis
NCBI taxonomy Id: 1291742
Other names: L. hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis LOOC260, Lactobacillus sp. LOOC260
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.