STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAP85715.1N-acetylmuramoyl-L-alanine amidase; Gene_1135; identified by MetaGeneAnnotator; putative. (284 aa)    
Predicted Functional Partners:
BAP85716.1
Aminoglycoside phosphotransferase; ATP binding site [chemical binding]; COG: COG3001; Phosphotransferase enzyme family; pfam01636; Protein Kinases, catalytic domain; cl09925; fructosamine kinase [Lactobacillus vaginalis ATCC 49540]; gene_1136; identified by MetaGeneAnnotator; putative; substrate binding site [chemical binding].
       0.857
BAP85919.1
Penicillin-binding protein 2B; Gene_1339; identified by MetaGeneAnnotator; putative.
 
  
 0.751
BAP85889.1
NLP/P60 protein; Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]; COG0791; NLP/P60 protein [Lactobacillus buchneri NRRL B-30929]; NlpC/P60 family; pfam00877; PFAM: NLP/P60; KEGG: ooe:OEOE_0805 cell wall-associated hydrolase; gene_1309; identified by MetaGeneAnnotator; putative.
 
  
 0.749
BAP85472.1
Membrane protein; Rhomboid family; pfam01694; gene_892; identified by MetaGeneAnnotator; putative; membrane-associated serine protease [Lactobacillus brevis ATCC 367].
  
   0.732
hisS
Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent..; cd00773; HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is...; cd00859; anticodon binding site; dimer interface [polypeptide binding]; gene_ [...]
  
    0.634
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
  
  
 0.626
BAP85469.1
Penicillin-binding protein; COG: COG0768; Pfam: PF03717,PF00905; InterPro: IPR001460; Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]; COG0768; Penicillin binding protein transpeptidase domain; pfam00905; Penicillin-binding Protein dimerisation domain; pfam03717; gene_889; identified by MetaGeneAnnotator; putative; penicillin-binding protein [Lactobacillus reuteri CF48- 3A].
 
  
 0.586
BAP85335.1
Competence protein ComA; Gene_755; identified by MetaGeneAnnotator; putative; Belongs to the CinA family.
 
     0.579
BAP85846.1
Nucleoside 2-deoxyribosyltransferase; Gene_1266; identified by MetaGeneAnnotator; putative.
 
     0.571
cca
tRNA CCA-pyrophosphorylase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate.
  
 
 0.570
Your Current Organism:
Lactobacillus hokkaidonensis
NCBI taxonomy Id: 1291742
Other names: L. hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis LOOC260, Lactobacillus sp. LOOC260
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