STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAP85794.1Hypothetical protein; Gene_1214; identified by MetaGeneAnnotator; putative. (313 aa)    
Predicted Functional Partners:
BAP85795.1
Transcriptional regulator; Gene_1215; identified by MetaGeneAnnotator; putative.
 
    0.799
BAP86266.1
NmrA family protein; Gene_1686; identified by MetaGeneAnnotator; putative.
 
   0.662
BAP84747.1
Hydrolase; Alpha/beta hydrolase family; pfam12697; gene_167; hydrolase/acyltransferase [Lactobacillus pentosus KCA1]; identified by MetaGeneAnnotator; putative.
 
   0.486
BAP84860.1
Short chain dehydrogenase; NADP binding site [chemical binding]; Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs; cd05324; gene_280; identified by MetaGeneAnnotator; putative; short chain dehydrogenase [Lactobacillus buchneri CD034]; short chain dehydrogenase; Provisional; substrate binding site [chemical binding]; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   0.472
fumC
Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
  
  
 0.466
BAP84600.1
Carbonyl reductase; NADP binding site [chemical binding]; Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs; cd05324; gene_20; identified by MetaGeneAnnotator; putative; short chain dehydrogenase family protein [Pediococcus claussenii ATCC BAA- 344]; substrate binding site [chemical binding]; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   0.460
BAP85796.1
Recombinase RarA; ATP binding site [chemical binding]; MgsA AAA+ ATPase C terminal; pfam12002; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; cd00009; Walker A motif; Walker B motif; arginine finger; gene_1216; identified by MetaGeneAnnotator; putative; recombination factor protein RarA [Lactobacillus rhamnosus GG]; recombination factor protein RarA; Reviewed; strain coidentity: A [...]
  
    0.424
BAP84701.1
NAD-dependent epimerase/dehydratase family protein; Gene_121; identified by MetaGeneAnnotator; putative.
 
    0.414
BAP84599.1
NADPH:quinone reductase; Gene_19; identified by MetaGeneAnnotator; putative.
  
     0.407
Your Current Organism:
Lactobacillus hokkaidonensis
NCBI taxonomy Id: 1291742
Other names: L. hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis LOOC260, Lactobacillus sp. LOOC260
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