STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAP85929.1Transporter; Gene_1349; identified by MetaGeneAnnotator; putative. (392 aa)    
Predicted Functional Partners:
rrmA
23S rRNA methyltransferase A; Provisional; PRK11088; COG: COG0500; Pfam: PF08241; S-adenosylmethionine binding site [chemical binding]; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); cd02440; gene_1348; identified by MetaGeneAnnotator; putative; possible rRNA (guanine-N(1)-)-methyltransferase [Lactobacillus reuteri CF48- 3A].
       0.774
BAP85930.1
6-phosphogluconolactonase; COG: COG2706; Lactonase, 7-bladed beta-propeller; pfam10282; carboxy-cis,cis-muconate cyclase [Lactobacillus vaginalis ATCC 49540]; gene_1350; identified by MetaGeneAnnotator; putative.
       0.568
ftsK
Cell division protein FtsK; COG: COG1674; DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]; COG1674; Domain of unknown function (DUF4117); pfam13491; FtsK/SpoIIIE family DNA translocase [Lactobacillus reuteri MM2- 3]; FtsK/SpoIIIE family; pfam01580; Ftsk gamma domain; pfam09397; gene_1346; identified by MetaGeneAnnotator; putative; Belongs to the FtsK/SpoIIIE/SftA family.
 
     0.551
cspR
RNA methyltransferase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
       0.520
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
 
     0.484
BAP85678.1
Hypothetical protein; COG: COG0457; TPR motif; TPR repeat; pfam13414; Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; cd00189; Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi; cl024 [...]
      0.451
recG
ATP-dependent DNA helicase; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
 
     0.429
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family.
  
     0.408
Your Current Organism:
Lactobacillus hokkaidonensis
NCBI taxonomy Id: 1291742
Other names: L. hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis LOOC260, Lactobacillus sp. LOOC260
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.