STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAP85967.1Hypothetical protein; Gene_1387; identified by MetaGeneAnnotator; putative. (91 aa)    
Predicted Functional Partners:
BAP85966.1
HNH nuclease [Lactobacillus fermentum 28-3- CHN]; gene_1386; identified by MetaGeneAnnotator; putative.
       0.773
BAP85961.1
Possible phage capsid protein; Gene_1381; identified by MetaGeneAnnotator; putative.
       0.507
BAP85962.1
Phage portal protein; Gene_1382; identified by MetaGeneAnnotator; putative.
       0.507
BAP85963.1
Hypothetical protein; Gene_1383; identified by MetaGeneAnnotator; putative.
       0.507
BAP85964.1
Phage Terminase; pfam03354; Phage terminase-like protein, large subunit [General function prediction only]; gene_1384; identified by MetaGeneAnnotator; putative; phage terminase [Lactobacillus fermentum IFO 3956].
       0.507
BAP85965.1
Phage terminase small subunit; Gene_1385; identified by MetaGeneAnnotator; putative.
       0.507
BAP85968.1
Phage protein; Gene_1388; identified by MetaGeneAnnotator; putative.
       0.440
Your Current Organism:
Lactobacillus hokkaidonensis
NCBI taxonomy Id: 1291742
Other names: L. hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis LOOC260, Lactobacillus sp. LOOC260
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.