STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAP86076.1Hypothetical protein; Gene_1496; identified by MetaGeneAnnotator; putative. (199 aa)    
Predicted Functional Partners:
BAP86077.1
Hypothetical protein; Gene_1497; identified by MetaGeneAnnotator; putative.
  
    0.631
BAP86084.1
Hypothetical protein; Gene_1504; identified by MetaGeneAnnotator; putative.
  
     0.587
BAP86078.1
Recombinase RarA; ATP binding site [chemical binding]; COG: COG2256; Pfam: PF00004; InterPro: IPR003593; MgsA AAA+ ATPase C terminal; pfam12002; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC; cd00009; Walker A motif; Walker B motif; arginine finger; crossover junction endodeoxyribonuclease [Lactobacillus reuteri CF48- 3A]; gene_1498; identified by MetaGeneAnnotator; putative; reco [...]
       0.567
BAP85046.1
Hypothetical protein; Bacteriocin-protection, YdeI or OmpD-Associated; pfam13376; Hypothetical protein zj316_3150 [Lactobacillus plantarum ZJ316]; gene_466; identified by MetaGeneAnnotator; putative.
 
     0.467
BAP86006.1
5'-nucleotidase; Gene_1426; identified by MetaGeneAnnotator; putative; Belongs to the 5'-nucleotidase family.
 
     0.451
ftsQ
Cell division protein FtsQ; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily.
  
     0.427
Your Current Organism:
Lactobacillus hokkaidonensis
NCBI taxonomy Id: 1291742
Other names: L. hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis LOOC260, Lactobacillus sp. LOOC260
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.