STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAP86127.1Hypothetical protein; Gene_1547; identified by MetaGeneAnnotator; putative. (409 aa)    
Predicted Functional Partners:
BAP86702.1
TetR family transcriptional regulator; Gene_2122; identified by MetaGeneAnnotator; putative.
 
     0.684
BAP85008.1
Beta-lactamase class A [Lactobacillus farciminis KCTC 3681]; COG2367 Beta-lactamase class A; Penicillin binding protein transpeptidase domain; cl01009; gene_428; identified by MetaGeneAnnotator; putative.
 
     0.510
BAP86704.1
ABC transporter transmembrane region; cl00549; ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; COG1132; COG1132 ABC-type multidrug transport system, ATPase and permease components; gene_2124; identified by MetaGeneAnnotator; putative; multidrug/protein/lipid ABC transporter ATP-binding/permease [Lactobacillus coryniformis subsp. coryniformis KCTC 3167]; partial.
  
 
   0.507
BAP86124.1
ABC transporter signature motif; ABC transporter transmembrane region; pfam00664; ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; COG1132; ATP binding site [chemical binding]; COG: COG1132; Pfam: PF00664,PF00005; InterPro: IPR001140; D-loop; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and..; cd03254; H-loop/switch region; Q-loop/lid; Walker A/ [...]
   
   0.504
BAP86125.1
ABC transporter signature motif; ABC transporter transmembrane region; pfam00664; ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; COG1132; ATP binding site [chemical binding]; COG: COG1132; Pfam: PF00664,PF00005; InterPro: IPR001140; D-loop; H-loop/switch region; P-loop containing Nucleoside Triphosphate Hydrolases; cl09099; Q-loop/lid; Walker A/P-loop; Walker B; gene_1545; identified by MetaGeneAnnotator; putative; multidrug resistance ABC superfamily ATP binding cassette transporter, ABC/membrane protein [Lactobacillus antri DSM 16041].
   
   0.504
BAP86126.1
Transcriptional regulator; Gene_1546; identified by MetaGeneAnnotator; putative.
       0.486
BAP86123.1
Beta-lactamase; Gene_1543; identified by MetaGeneAnnotator; putative.
       0.482
BAP85724.1
Membrane protein; Gene_1144; identified by MetaGeneAnnotator; putative.
  
     0.408
Your Current Organism:
Lactobacillus hokkaidonensis
NCBI taxonomy Id: 1291742
Other names: L. hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis LOOC260, Lactobacillus sp. LOOC260
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