STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAP86357.1Conjugal transfer protein; Conjugative transposon protein, partial [Lactobacillus coryniformis subsp. coryniformis KCTC 3167]; gene_1777; identified by MetaGeneAnnotator; putative. (680 aa)    
Predicted Functional Partners:
BAP86358.1
NlpC/P60 family peptidase; KEGG: lsp:Bsph_4405 2.7e-25 peptidoglycan DL-endopeptidase CwlO precursor; Psort location: Extracellular, score: 9.72; NlpC/P60 family protein, partial [Enterococcus faecium ERV99]; NlpC/P60 family; pfam00877; gene_1778; identified by MetaGeneAnnotator; putative.
 
  
 0.820
BAP86360.1
Conjugal transfer protein; Conjugative transposon protein TcpC; pfam12642; conjugative transposon protein [Lactobacillus coryniformis subsp. coryniformis KCTC 3167]; gene_1780; identified by MetaGeneAnnotator; putative.
 
    0.812
BAP86354.1
Conjugal transfer protein; Gene_1774; identified by MetaGeneAnnotator; putative.
 
    0.811
BAP86356.1
ATPase; AAA-like domain; pfam12846; ATPase [Clostridium difficile 630]; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; gene_1776; identified by MetaGeneAnnotator; putative.
 
     0.810
BAP86353.1
Conjugal transfer protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin; conjugative transposon protein [Clostridium difficile 630]; gene_1773; identified by MetaGeneAnnotator; putative.
 
    0.806
BAP86355.1
Conjugal transfer protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin; TcpE family; pfam12648; conjugative transposon protein [Clostridium difficile 630]; gene_1775; identified by MetaGeneAnnotator; putative.
 
     0.806
BAP86343.1
Conjugal transfer protein; Gene_1763; identified by MetaGeneAnnotator; putative.
 
     0.793
BAP86342.1
Conjugal transfer protein; Gene_1762; identified by MetaGeneAnnotator; putative.
 
     0.791
BAP86345.1
Cell division protein FtsK; DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]; COG1674; FtsK/SpoIIIE family; pfam01580; PFAM: Cell divisionFtsK/SpoIIIE; KEGG: cdf:CD3344 conjugative transposon-related FtsK/SpoIII-relatd protein; cell division FtsK/SpoIIIE [Clostridium sp. DL-VIII]; gene_1765; identified by MetaGeneAnnotator; putative.
 
    0.782
BAP86349.1
Replication initiation protein; COG1476 Predicted transcriptional regulators; Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; cd00093; Replication initiation factor; pfam02486; gene_1769; identified by MetaGeneAnnotator; putative; non-specific DNA binding site [nucleotide binding]; partial; salt bridge; sequence-specific DNA binding site [nucleotide binding]; transcriptional regulator, Tn916 [Lactobacillus coryniformis subsp. coryniformis KCTC 3167].
  
     0.774
Your Current Organism:
Lactobacillus hokkaidonensis
NCBI taxonomy Id: 1291742
Other names: L. hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis LOOC260, Lactobacillus sp. LOOC260
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.