STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
arsRArsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to..; cd00090; dimerization interface [polypeptide binding]; gene_1814; identified by MetaGeneAnnotator; putative; putative DNA binding site [nucleotide binding]; putative Zn2+ binding site [ion binding]; regulator of arsenical resistance [Lactobacillus plantarum WCFS1]. (119 aa)    
Predicted Functional Partners:
arsD-2
Arsenical resistance operon trans-acting repressor ArsD; pfam06953; gene_1813; identified by MetaGeneAnnotator; putative; repressor of arsenical resistance [Lactobacillus plantarum WCFS1].
 
   
 0.859
arsA
Arsenical pump-driving ATPase; ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces..; cd02035; DTAP/Switch II; Nucleotide binding site [chemical binding]; P loop; Switch I; arsenical pump-driving ATPase ArsA [Enterococcus faecalis ARO1/DG]; arsenite-activated ATPase ArsA; TIGR00345; gene_1812; identified by MetaGeneAnnotator; putative.
 
   
 0.795
BAP86524.1
Arsenate reductase; Low molecular weight phosphatase family; cd00115; Low molecular weight phosphotyrosine protein phosphatase; pfam01451; SMART: Protein-tyrosine phosphatase, low molecular weight; TIGRFAM: Arsenate reductase StaphA (thioredoxin); KEGG: lcb:LCABL_29620 arsenate reductase; PFAM: Protein-tyrosine phosphatase, low molecular weight; gene_1944; identified by MetaGeneAnnotator; putative; protein tyrosine phosphatase [Lactobacillus buchneri NRRL B- 30929].
 
  
 0.764
arsB
Arsenical pump membrane protein; Involved in arsenical resistance. Thought to form the channel of an arsenite pump; Belongs to the ArsB family.
 
   
 0.698
arsD
Arsenical resistance operon trans-acting repressor ArsD; pfam06953; gene_1809; identified by MetaGeneAnnotator; putative; repressor of arsenical resistance [Lactobacillus plantarum WCFS1].
 
   
 0.501
merA
Mercuric reductase; Resistance to Hg(2+) in bacteria appears to be governed by a specialized system which includes mercuric reductase. MerA protein is responsible for volatilizing mercury as Hg(0). Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
     
 0.443
BAP86387.1
Putative positive regulator of cadmium resistance; Gene_1807; identified by MetaGeneAnnotator; putative.
 
  
 0.441
BAP86390.1
Gene_1810; hypothetical protein pWCFS103_14 [Lactobacillus plantarum WCFS1]; identified by MetaGeneAnnotator; putative.
       0.435
BAP86386.1
Cadmium transporter; Gene_1806; identified by MetaGeneAnnotator; putative.
 
  
 0.421
BAP85065.1
Cro/Cl family transcriptional regulator; FeoA domain; pfam04023; Helix-turn-helix domains; cl00088; Iron dependent repressor, metal binding and dimerisation domain; pfam02742; Mn-dependent transcriptional regulator [Transcription]; COG1321; gene_485; identified by MetaGeneAnnotator; putative; metal-dependent regulator [Lactobacillus fermentum 28-3- CHN].
  
  
 0.400
Your Current Organism:
Lactobacillus hokkaidonensis
NCBI taxonomy Id: 1291742
Other names: L. hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis LOOC260, Lactobacillus sp. LOOC260
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