STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAP86671.1Sodium:solute symporter; InterPro: IPR001927; gene_2091; identified by MetaGeneAnnotator; putative; lactose permease [Lactobacillus antri DSM 16041]; melibiose:sodium symporter; Provisional; cl15392; sugar (Glycoside-Pentoside-Hexuronide) transporter; TIGR00792. (482 aa)    
Predicted Functional Partners:
BAP85310.1
Hypothetical protein; Gene_730; identified by MetaGeneAnnotator; putative.
 
     0.656
BAP84903.1
Beta-galactosidase, small subunit; Beta galactosidase small chain; cl03787; Pfam: PF02929; InterPro: IPR014718; overlaps another CDS with the same product name; beta-galactosidase small subunit [Lactobacillus antri DSM 16041]; gene_323; identified by MetaGeneAnnotator; putative.
 
    0.458
BAP86672.1
Sodium:dicarboxylate symporter family protein; Gene_2092; identified by MetaGeneAnnotator; putative; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.415
BAP84904.1
Beta-galactosidase, large subunit; Glycosyl hydrolases family 2, TIM barrel domain; pfam02836; Glycosyl hydrolases family 2, sugar binding domain; pfam02837; Glycosyl hydrolases family 2; pfam00703; PFAM: Glycoside hydrolase, family 2, TIM barrel; Glycoside hydrolase, family 2, carbohydrate-binding; Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich; KEGG: lrf:LAR_0276 beta-galactosidase large subunit; family 2 glycoside hydrolase [Lactobacillus buchneri NRRL B- 30929]; gene_324; identified by MetaGeneAnnotator; putative.
 
    0.409
aspS-2
aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
  
    0.407
Your Current Organism:
Lactobacillus hokkaidonensis
NCBI taxonomy Id: 1291742
Other names: L. hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis LOOC260, Lactobacillus sp. LOOC260
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