STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAP86687.1Two-component system, response regulator LytT; Gene_2107; identified by MetaGeneAnnotator; putative. (240 aa)    
Predicted Functional Partners:
lytS
Two-component system, sensor histidine kinase LytS; 5TMR of 5TMR-LYT; pfam07694; ATP binding site [chemical binding]; COG: COG3275; Domain present in phytochromes and cGMP-specific phosphodiesterases; smart00065; G-X-G motif; Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins; cd00075; Histidine kinase; pfam06580; Mg2+ binding site [ion binding]; Putative regulator of cell autolysis [Signal transduction mechanisms [...]
 0.998
lrgB
Antiholin-like protein LrgB; COG: COG1346; LrgB-like family; cl00596; gene_2105; identified by MetaGeneAnnotator; putative; murein hydrolase regulator LrgB [Streptococcus agalactiae ATCC 13813].
   
 0.936
lrgA
LrgA family; cl00608; effector of murein hydrolase LrgA [Lactobacillus brevis ATCC 367]; gene_2106; identified by MetaGeneAnnotator; putative.
 
   
 0.844
BAP85376.1
Histidine kinase; Gene_796; identified by MetaGeneAnnotator; putative; partial.
 
  
 0.525
BAP86689.1
Hypothetical protein; Gene_2109; identified by MetaGeneAnnotator; putative.
       0.506
proA
Gamma-glutamyl phosphate reductase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.
    
   0.424
Your Current Organism:
Lactobacillus hokkaidonensis
NCBI taxonomy Id: 1291742
Other names: L. hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis LOOC260, Lactobacillus sp. LOOC260
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