STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
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Coexpression
Experiments
Databases
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[Homology]
Score
metND-methionine transport system ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (340 aa)    
Predicted Functional Partners:
metI
ABC-ATPase subunit interface; D-methionine transport system permease protein MetI [Listeria innocua FSL J1- 023]; Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and..; cd06261; conserved gate region; dimer interface [polypeptide binding]; gene_2151; identified by MetaGeneAnnotator; putative; identified by match to protein family HMM PF00528.
 0.998
BAP86094.1
Methionine ABC transporter permease protein; ABC-ATPase subunit interface; COG: COG2011; Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and..; cd06261; gene_1514; identified by MetaGeneAnnotator; putative; metal ion ABC superfamily ATP binding cassette transporter, membrane protein [Lactobacillus vaginalis ATCC 49540].
 0.992
BAP86733.1
Lipoprotein; ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]; COG1464; COG: COG1464; gene_2153; identified by MetaGeneAnnotator; putative; methionine ABC superfamily ATP binding cassette transporter, binding protein [Lactobacillus ruminis ATCC 25644]; Belongs to the nlpA lipoprotein family.
 0.992
BAP86093.1
ABC superfamily ATP binding cassette transporter, binding protein [Lactobacillus vaginalis ATCC 49540]; COG: COG1464; NLPA lipoprotein; pfam03180; gene_1513; identified by MetaGeneAnnotator; putative.
 0.987
metN-2
Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
  
  
 
0.906
BAP86280.1
ABC transporter signature motif; ABC transporter transmembrane region; pfam00664; ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; COG1132; ATP binding site [chemical binding]; COG: COG1132; Pfam: PF00664,PF00005; InterPro: IPR001140; D-loop; H-loop/switch region; P-loop containing Nucleoside Triphosphate Hydrolases; cl09099; Q-loop/lid; Walker A/P-loop; Walker B; gene_1700; identified by MetaGeneAnnotator; putative; partial; xenobiotic-transporting ATPase [Lactobacillus hilgardii ATCC 8290].
 
     
0.899
BAP86706.1
ABC transporter signature motif; ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; COG1132; ATP binding site [chemical binding]; COG1132 ABC-type multidrug transport system, ATPase and permease components; D-loop; H-loop/switch region; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic..; cd03251; Q-loop/lid; Walker A/P-loop; Walker B; gene_2126; id [...]
 
     
0.898
BAP85298.1
Peptide ABC transporter ATP-binding protein; A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the 'double-glycine' leader peptides from the precursors of various bacteriocins; cd02418; ABC transporter signature motif; ABC transporter transmembrane region; pfam00664; ABC-type bacteriocin transporter; TIGR01193; ATP binding site [chemical binding]; ATP-binding cassette domain of multidrug resistance protein-like transporters; cd03228; ATP-binding cassette, subfamily [...]
 
     
0.875
BAP86125.1
ABC transporter signature motif; ABC transporter transmembrane region; pfam00664; ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]; COG1132; ATP binding site [chemical binding]; COG: COG1132; Pfam: PF00664,PF00005; InterPro: IPR001140; D-loop; H-loop/switch region; P-loop containing Nucleoside Triphosphate Hydrolases; cl09099; Q-loop/lid; Walker A/P-loop; Walker B; gene_1545; identified by MetaGeneAnnotator; putative; multidrug resistance ABC superfamily ATP binding cassette transporter, ABC/membrane protein [Lactobacillus antri DSM 16041].
 
     
0.860
livM
COG4177 ABC-type branched-chain amino acid transport system, permease component; TM-ABC transporter signature motif; Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of..; cd06581; branched-chain amino acid ABC transporter, permease protein [Lactobacillus coryniformis subsp. coryniformis KCTC 3167]; gene_458; identified by MetaGeneAnnotator; putative.
 
 
    0.797
Your Current Organism:
Lactobacillus hokkaidonensis
NCBI taxonomy Id: 1291742
Other names: L. hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis LOOC260, Lactobacillus sp. LOOC260
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