STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAP86748.1Hypothetical protein; Gene_2168; identified by MetaGeneAnnotator; putative. (228 aa)    
Predicted Functional Partners:
BAP84665.1
Integral membrane protein; COG: COG3619; Protein of unknown function (DUF1275); pfam06912; gene_85; identified by MetaGeneAnnotator; putative; integral membrane protein [Lactobacillus plantarum subsp. plantarum ATCC 14917].
 
     0.600
BAP86747.1
ABC transporter [Pediococcus claussenii ATCC BAA-344]; ABC transporter signature motif; ABC transporter transmembrane region; pfam00664; ATP binding site [chemical binding]; D-loop; H-loop/switch region; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic..; cd03251; Q-loop/lid; Walker A/P-loop; Walker B; gene_2167; identified by MetaGeneAnnotator; putative; lipid A export permease/ATP-bin [...]
       0.565
BAP86746.1
Hypothetical protein; Gene_2166; identified by MetaGeneAnnotator; putative.
       0.449
BAP86679.1
Prophage protein; Gene_2099; identified by MetaGeneAnnotator; putative.
  
     0.446
Your Current Organism:
Lactobacillus hokkaidonensis
NCBI taxonomy Id: 1291742
Other names: L. hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis JCM 18461, Lactobacillus hokkaidonensis LOOC260, Lactobacillus sp. LOOC260
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.