STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAK46955.1Hypothetical protein; Gene_53; identified by MetaGeneAnnotator; putative. (59 aa)    
Predicted Functional Partners:
miaA
tRNA delta(2)-isopentenylpyrophosphatetransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
       0.717
glnR
Transcriptional regulator GlnR; COG: COG0789; Pfam: PF00376; InterPro: IPR000551; DNA binding residues [nucleotide binding]; Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators; cd01105; MerR HTH family regulatory protein; pfam13411; gene_50; identified by MetaGeneAnnotator; putative; putative dimer interface [polypeptide binding]; transcriptional regulator GlnR [Lactobacillus plantarum subsp. plantarum ATCC 14917].
       0.577
glnA
Glutamine synthetase, beta-Grasp domain; pfam03951; Glutamine synthetase, catalytic domain; pfam00120; gene_49; glutamine synthetase [Lactobacillus brevis ATCC 367]; glutamine synthetase, type I; TIGR00653; identified by MetaGeneAnnotator; putative.
       0.572
GAK46950.1
Hypothetical protein; Gene_48; identified by MetaGeneAnnotator; putative.
 
     0.558
GAK46954.1
Glycerophosphoryl diester phosphodiesterase; Gene_52; identified by MetaGeneAnnotator; putative.
       0.553
GAK48207.1
UPF0154 protein [Lactobacillus plantarum ZJ316]; Uncharacterized protein conserved in bacteria [Function unknown]; gene_1305; identified by MetaGeneAnnotator; putative.
   
    0.463
GAK47038.1
Hypothetical protein; Gene_136; identified by MetaGeneAnnotator; putative.
  
    0.453
GAK48663.1
Hypothetical protein; Gene_1761; identified by MetaGeneAnnotator; putative.
  
     0.451
GAK46949.1
Hypothetical protein; Gene_47; identified by MetaGeneAnnotator; putative.
 
     0.447
GAK47058.1
Hypothetical protein; Putative heavy-metal-binding; pfam01906; UPF0145 protein [Lactobacillus plantarum ZJ316]; gene_156; identified by MetaGeneAnnotator; putative; Belongs to the UPF0145 family.
   
    0.443
Your Current Organism:
Lactobacillus oryzae
NCBI taxonomy Id: 1291743
Other names: L. oryzae JCM 18671, Lactobacillus oryzae JCM 18671, Lactobacillus oryzae SG293, Lactobacillus sp. JCM 18671, Lactobacillus sp. SG293
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.